linear_transform.hh

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/* -*- mia-c++  -*-
 *
 * This file is part of MIA - a toolbox for medical image analysis
 * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
 *
 * MIA is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with MIA; if not, see <http://www.gnu.org/licenses/>.
 *
 */
 
#ifndef mia_3d_linear_transform_hh
#define mia_3d_linear_transform_hh
 
 
#include <mia/3d/transform.hh>
 
NS_MIA_BEGIN
 
class  EXPORT_3D C3DLinearTransform: public C3DTransformation
{
public:
       C3DLinearTransform();
       C3DLinearTransform(const C3DBounds& size, const C3DInterpolatorFactory& ipf);
       virtual C3DTransformation *invert() const;
       virtual size_t degrees_of_freedom() const;
       virtual void set_identity();
       virtual C3DFMatrix derivative_at(const C3DFVector& x) const;
       virtual C3DFMatrix derivative_at(int x, int y, int z) const;
       virtual void translate(const C3DFVectorfield& gradient, CDoubleVector& params) const;
       virtual float get_max_transform() const;
       virtual CDoubleVector  get_parameters() const;
       virtual void set_parameters(const CDoubleVector& params);
       virtual const C3DBounds& get_size() const;
       virtual float pertuberate(C3DFVectorfield& v) const;
       virtual C3DFVector apply(const C3DFVector& x) const;
       virtual C3DFVector operator () (const C3DFVector& x) const;
       virtual float get_jacobian(const C3DFVectorfield& v, float delta) const;

       virtual void add(const C3DTransformation& a);
       virtual void update(float step, const C3DFVectorfield& a);
       virtual float divergence() const;
       virtual float curl() const;
       virtual double get_divcurl_cost(double wd, double wr, CDoubleVector& gradient) const;
       double get_divcurl_cost(double wd, double wr) const;
 
       virtual C3DTransformation::const_iterator begin() const;
       virtual C3DTransformation::const_iterator end() const;
       virtual C3DTransformation::const_iterator begin_range(const C3DBounds& begin, const C3DBounds& end) const;
       virtual C3DTransformation::const_iterator end_range(const C3DBounds& begin, const C3DBounds& end) const;
 
protected:
       class iterator_impl:  public C3DTransformation::iterator_impl
       {
              friend class C3DLinearTransform;
              iterator_impl(const C3DBounds& pos, const C3DBounds& size);
              iterator_impl(const C3DBounds& pos, const C3DBounds& size,
                            const C3DBounds& begin, const C3DBounds& end);
 
              C3DTransformation::iterator_impl *clone()const;
              virtual const C3DFVector& do_get_value()const;
              virtual void do_x_increment();
              virtual void do_y_increment();
              virtual void do_z_increment();
              C3DFVector m_value;
       };
 
private:
       virtual P3DTransformation do_upscale(const C3DBounds& size) const;
       virtual C3DTransformation *do_clone() const;
       virtual P3DImage do_transform(const C3DImage& src, const C3DInterpolatorFactory&) const;
       std::vector<double> m_matrix;
       C3DBounds m_size;
 
};
 
NS_MIA_END
 
#endif